pCRM PCE8069

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Region plotRegion plot detailDotplot
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CRM:
PCE8069
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
17,274,311
pCRM end:
17,276,017
pCRM len:
1,707

D.pse fasta:
dpse unflanked
dpse arm:
3,213,122
dpse start:
1,645,156
dpse end:
1,647,216
dpse len:
2,061

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
8.2

percent iden:
73.6%

D.mel sites:
20
D.pse sites:
22
Aligned sites:
14
Aligned + preserved sites:
19

D.mel site dens:
11.7
D.pse site dens:
10.7
Aligned site dens:
8.2
Aligned + preserved site dens:
11.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-2,521
5' gene CG:
CG3380
5' gene:
CG3380
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG3380 flybase
5' gene start:
17,271,790
5' gene end:
17,267,231
5' gene txl start:
17,270,492

pCRM position 3' gene relative:
-11,496
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG5799
3' gene:
dve
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
dve flybase
3' gene start:
17,287,513
3' gene end:
17,329,969
3' gene txl start:
17,288,232

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: