pCRM PCE8071
| CRM: |
| PCE8071 |
|---|
| Overlaps: |
| sqz neurogenic |
|---|
| Reference: |
| Berman, 2004 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 14,999,463 |
|---|
| pCRM end: |
| 15,001,552 |
|---|
| pCRM len: |
| 2,090 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,587 |
|---|
| dpse start: |
| 262,399 |
|---|
| dpse end: |
| 260,334 |
|---|
| dpse len: |
| 2,066 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 8.0 |
|---|
|
| percent iden: |
| 60.7% |
|---|
|
| D.mel sites: |
| 29 |
|---|
| D.pse sites: |
| 26 |
|---|
| Aligned sites: |
| 12 |
|---|
| Aligned + preserved sites: |
| 24 |
|---|
|
| D.mel site dens: |
| 13.9 |
|---|
| D.pse site dens: |
| 12.6 |
|---|
| Aligned site dens: |
| 5.7 |
|---|
| Aligned + preserved site dens: |
| 11.5 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +9504 |
|---|
| 5' gene CG: |
| CG5557 |
|---|
| 5' gene: |
| sqz |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| sqz flybase |
|---|
| 5' gene start: |
| 14,989,959 |
|---|
| 5' gene end: |
| 14,996,313 |
|---|
| 5' gene txl start: |
| 14,993,773 |
|---|
|
| pCRM position 3' gene relative: |
| -1,186 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG14282 |
|---|
| 3' gene: |
| CG14282 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| CG14282 flybase |
|---|
| 3' gene start: |
| 15,002,738 |
|---|
| 3' gene end: |
| 15,003,672 |
|---|
| 3' gene txl start: |
| 15,002,790 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| nos |
|---|
| Gap/pair-rule annotation: |
| FlyBase |
|---|
| pCRM relative position: |
| +16485 |
|---|
