pCRM PCE8074

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Region plotRegion plot detailDotplot
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CRM:
PCE8074
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
23,192,304
pCRM end:
23,192,750
pCRM len:
447

D.pse fasta:
dpse unflanked
dpse arm:
3,213,011
dpse start:
901,520
dpse end:
901,946
dpse len:
427

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
7.7

percent iden:
75.6%

D.mel sites:
10
D.pse sites:
8
Aligned sites:
7
Aligned + preserved sites:
8

D.mel site dens:
22.4
D.pse site dens:
18.7
Aligned site dens:
15.7
Aligned + preserved site dens:
17.9

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+8073
5' gene CG:
CG13980
5' gene:
CG13980
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG13980 flybase
5' gene start:
23,184,231
5' gene end:
23,186,067
5' gene txl start:
23,184,231

pCRM position 3' gene relative:
+40862
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG31062
3' gene:
side
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
side flybase
3' gene start:
23,233,612
3' gene end:
23,191,668
3' gene txl start:
23,233,612

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: