pCRM PCE8080
| CRM: |
| PCE8080 |
|---|
| Overlaps: |
| odd stripes 3/6 |
|---|
| Reference: |
| Berman, 2004 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 3,601,045 |
|---|
| pCRM end: |
| 3,602,748 |
|---|
| pCRM len: |
| 1,704 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,134 |
|---|
| dpse start: |
| 333,579 |
|---|
| dpse end: |
| 331,642 |
|---|
| dpse len: |
| 1,938 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 7.5 |
|---|
|
| percent iden: |
| 66.8% |
|---|
|
| D.mel sites: |
| 23 |
|---|
| D.pse sites: |
| 21 |
|---|
| Aligned sites: |
| 12 |
|---|
| Aligned + preserved sites: |
| 19 |
|---|
|
| D.mel site dens: |
| 13.5 |
|---|
| D.pse site dens: |
| 10.8 |
|---|
| Aligned site dens: |
| 7.0 |
|---|
| Aligned + preserved site dens: |
| 11.2 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -1,728 |
|---|
| 5' gene CG: |
| CG3851 |
|---|
| 5' gene: |
| odd |
|---|
| 5' Gap/pair-rule annotation: |
| BDGP |
|---|
| 5' gene insitu: |
| odd insitu |
|---|
| 5' gene flybase: |
| odd flybase |
|---|
| 5' gene start: |
| 3,599,317 |
|---|
| 5' gene end: |
| 3,596,790 |
|---|
| 5' gene txl start: |
| 3,598,927 |
|---|
|
| pCRM position 3' gene relative: |
| -9,112 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG2788 |
|---|
| 3' gene: |
| Dot |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| Dot flybase |
|---|
| 3' gene start: |
| 3,611,860 |
|---|
| 3' gene end: |
| 3,613,740 |
|---|
| 3' gene txl start: |
| 3,611,986 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
