pCRM PCE8082
| CRM: |
| PCE8082 |
|---|
| Overlaps: |
| CE8026 |
|---|
| Reference: |
| Berman, 2004 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 11,423,413 |
|---|
| pCRM end: |
| 11,426,281 |
|---|
| pCRM len: |
| 2,869 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,649 |
|---|
| dpse start: |
| 333,469 |
|---|
| dpse end: |
| 329,927 |
|---|
| dpse len: |
| 3,543 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 7.3 |
|---|
|
| percent iden: |
| 66.1% |
|---|
|
| D.mel sites: |
| 39 |
|---|
| D.pse sites: |
| 20 |
|---|
| Aligned sites: |
| 15 |
|---|
| Aligned + preserved sites: |
| 20 |
|---|
|
| D.mel site dens: |
| 13.6 |
|---|
| D.pse site dens: |
| 5.6 |
|---|
| Aligned site dens: |
| 5.2 |
|---|
| Aligned + preserved site dens: |
| 7.0 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -44,901 |
|---|
| 5' gene CG: |
| CG18516 |
|---|
| 5' gene: |
| CG18516 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG18516 flybase |
|---|
| 5' gene start: |
| 11,378,512 |
|---|
| 5' gene end: |
| 11,374,367 |
|---|
| 5' gene txl start: |
| 11,378,512 |
|---|
|
| pCRM position 3' gene relative: |
| -32,341 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG5302 |
|---|
| 3' gene: |
| CG5302 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| CG5302 flybase |
|---|
| 3' gene start: |
| 11,458,622 |
|---|
| 3' gene end: |
| 11,464,995 |
|---|
| 3' gene txl start: |
| 11,458,622 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
