pCRM PCE8083
| CRM: |
| PCE8083 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3L.3 |
|---|
| pCRM start: |
| 14,121,556 |
|---|
| pCRM end: |
| 14,123,127 |
|---|
| pCRM len: |
| 1,572 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,053 |
|---|
| dpse start: |
| 590,545 |
|---|
| dpse end: |
| 592,246 |
|---|
| dpse len: |
| 1,702 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 7.3 |
|---|
|
| percent iden: |
| 59.9% |
|---|
|
| D.mel sites: |
| 19 |
|---|
| D.pse sites: |
| 20 |
|---|
| Aligned sites: |
| 10 |
|---|
| Aligned + preserved sites: |
| 17 |
|---|
|
| D.mel site dens: |
| 12.1 |
|---|
| D.pse site dens: |
| 11.8 |
|---|
| Aligned site dens: |
| 6.4 |
|---|
| Aligned + preserved site dens: |
| 10.8 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -41,352 |
|---|
| 5' gene CG: |
| CG32139 |
|---|
| 5' gene: |
| Sox21b |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| Sox21b flybase |
|---|
| 5' gene start: |
| 14,080,204 |
|---|
| 5' gene end: |
| 14,061,262 |
|---|
| 5' gene txl start: |
| 14,074,952 |
|---|
|
| pCRM position 3' gene relative: |
| +4373 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG5893 |
|---|
| 3' gene: |
| D |
|---|
| 3' Gap/pair-rule annotation: |
| BDGP |
|---|
| 3' gene insitu: |
| D insitu |
|---|
| 3' gene flybase: |
| D flybase |
|---|
| 3' gene start: |
| 14,127,500 |
|---|
| 3' gene end: |
| 14,124,480 |
|---|
| 3' gene txl start: |
| 14,126,218 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
