pCRM PCE8085
| CRM: |
| PCE8085 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2R.3 |
|---|
| pCRM start: |
| 12,253,766 |
|---|
| pCRM end: |
| 12,255,302 |
|---|
| pCRM len: |
| 1,537 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,122 |
|---|
| dpse start: |
| 15,372 |
|---|
| dpse end: |
| 14,068 |
|---|
| dpse len: |
| 1,305 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 7.2 |
|---|
|
| percent iden: |
| 54.6% |
|---|
|
| D.mel sites: |
| 19 |
|---|
| D.pse sites: |
| 15 |
|---|
| Aligned sites: |
| 13 |
|---|
| Aligned + preserved sites: |
| 15 |
|---|
|
| D.mel site dens: |
| 12.4 |
|---|
| D.pse site dens: |
| 11.5 |
|---|
| Aligned site dens: |
| 8.5 |
|---|
| Aligned + preserved site dens: |
| 9.8 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -23,540 |
|---|
| 5' gene CG: |
| CG10953 |
|---|
| 5' gene: |
| CG10953 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG10953 flybase |
|---|
| 5' gene start: |
| 12,230,226 |
|---|
| 5' gene end: |
| 12,229,185 |
|---|
| 5' gene txl start: |
| 12,230,180 |
|---|
|
| pCRM position 3' gene relative: |
| -3,625 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG10950 |
|---|
| 3' gene: |
| CG10950 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| CG10950 flybase |
|---|
| 3' gene start: |
| 12,258,927 |
|---|
| 3' gene end: |
| 12,260,889 |
|---|
| 3' gene txl start: |
| 12,259,097 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
