pCRM PCE8091

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8091
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
11,213,064
pCRM end:
11,213,664
pCRM len:
601

D.pse fasta:
dpse unflanked
dpse arm:
3,212,170
dpse start:
100,371
dpse end:
101,025
dpse len:
655

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
7.1

percent iden:
81.2%

D.mel sites:
9
D.pse sites:
11
Aligned sites:
7
Aligned + preserved sites:
9

D.mel site dens:
15.0
D.pse site dens:
16.8
Aligned site dens:
11.6
Aligned + preserved site dens:
15.0

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+3224
5' gene CG:
CG7590
5' gene:
scylla
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
scylla flybase
5' gene start:
11,209,840
5' gene end:
11,213,053
5' gene txl start:
11,210,422

pCRM position 3' gene relative:
+24695
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG32083
3' gene:
CG32083
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG32083 flybase
3' gene start:
11,238,359
3' gene end:
11,237,697
3' gene txl start:
11,238,074

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: