pCRM PCE8092

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Region plotRegion plot detailDotplot
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CRM:
PCE8092
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
1,233,357
pCRM end:
1,235,228
pCRM len:
1,872

D.pse fasta:
dpse unflanked
dpse arm:
3,212,334
dpse start:
54,075
dpse end:
58,263
dpse len:
4,189

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
7.1

percent iden:
68.3%

D.mel sites:
23
D.pse sites:
32
Aligned sites:
9
Aligned + preserved sites:
23

D.mel site dens:
12.3
D.pse site dens:
7.6
Aligned site dens:
4.8
Aligned + preserved site dens:
12.3

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+3715
5' gene CG:
CG5156
5' gene:
CG5156
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG5156 flybase
5' gene start:
1,229,642
5' gene end:
1,231,137
5' gene txl start:
1,229,642

pCRM position 3' gene relative:
-6,475
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG5397
3' gene:
CG5397
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG5397 flybase
3' gene start:
1,241,703
3' gene end:
1,243,871
3' gene txl start:
1,241,733

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: