pCRM PCE8094

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8094
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
10,492,861
pCRM end:
10,493,546
pCRM len:
686

D.pse fasta:
dpse unflanked
dpse arm:
3,212,159
dpse start:
30,492
dpse end:
29,827
dpse len:
666

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
7.0

percent iden:
65.6%

D.mel sites:
9
D.pse sites:
9
Aligned sites:
8
Aligned + preserved sites:
8

D.mel site dens:
13.1
D.pse site dens:
13.5
Aligned site dens:
11.7
Aligned + preserved site dens:
11.7

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-5,321
5' gene CG:
CG30472
5' gene:
CG30472
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG30472 flybase
5' gene start:
10,487,540
5' gene end:
10,486,906
5' gene txl start:
10,487,501

pCRM position 3' gene relative:
-26,488
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG12959
3' gene:
CG12959
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG12959 flybase
3' gene start:
10,520,034
3' gene end:
10,520,632
3' gene txl start:
10,520,034

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: