pCRM PCE8100
| CRM: |
| PCE8100 |
|---|
| Overlaps: |
| eve early APR |
|---|
| Reference: |
| Fujioka, 1999 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2R.3 |
|---|
| pCRM start: |
| 5,042,174 |
|---|
| pCRM end: |
| 5,042,884 |
|---|
| pCRM len: |
| 711 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,009 |
|---|
| dpse start: |
| 134,461 |
|---|
| dpse end: |
| 133,686 |
|---|
| dpse len: |
| 776 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 6.7 |
|---|
|
| percent iden: |
| 64.6% |
|---|
|
| D.mel sites: |
| 10 |
|---|
| D.pse sites: |
| 10 |
|---|
| Aligned sites: |
| 8 |
|---|
| Aligned + preserved sites: |
| 10 |
|---|
|
| D.mel site dens: |
| 14.1 |
|---|
| D.pse site dens: |
| 12.9 |
|---|
| Aligned site dens: |
| 11.3 |
|---|
| Aligned + preserved site dens: |
| 14.1 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +2451 |
|---|
| 5' gene CG: |
| CG2328 |
|---|
| 5' gene: |
| eve |
|---|
| 5' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| eve flybase |
|---|
| 5' gene start: |
| 5,039,723 |
|---|
| 5' gene end: |
| 5,041,412 |
|---|
| 5' gene txl start: |
| 5,040,047 |
|---|
|
| pCRM position 3' gene relative: |
| -6,909 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG2331 |
|---|
| 3' gene: |
| TER94 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| TER94 flybase |
|---|
| 3' gene start: |
| 5,049,793 |
|---|
| 3' gene end: |
| 5,054,196 |
|---|
| 3' gene txl start: |
| 5,049,919 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| Adam |
|---|
| Gap/pair-rule annotation: |
| BDGP |
|---|
| pCRM relative position: |
| +12582 |
|---|
