pCRM PCE8102

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CRM:
PCE8102
Overlaps:
tll posterior
Reference:
Rudolph, 1999

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
26,663,942
pCRM end:
26,665,204
pCRM len:
1,263

D.pse fasta:
dpse unflanked
dpse arm:
3,213,207
dpse start:
614,458
dpse end:
616,188
dpse len:
1,731

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
6.7

percent iden:
65.0%

D.mel sites:
17
D.pse sites:
14
Aligned sites:
10
Aligned + preserved sites:
13

D.mel site dens:
13.5
D.pse site dens:
8.1
Aligned site dens:
7.9
Aligned + preserved site dens:
10.3

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+21005
5' gene CG:
CG15544
5' gene:
CG15544
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG15544 flybase
5' gene start:
26,642,937
5' gene end:
26,657,122
5' gene txl start:
26,648,906

pCRM position 3' gene relative:
-2,251
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG1378
3' gene:
tll
3' Gap/pair-rule annotation:
FlyBase
3' gene insitu:
3' gene flybase:
tll flybase
3' gene start:
26,667,455
3' gene end:
26,669,461
3' gene txl start:
26,667,634

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: