pCRM PCE8104
| CRM: |
| PCE8104 |
|---|
| Overlaps: |
| ems neurogenic |
|---|
| Reference: |
| Hartmann, 2000 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 9,723,602 |
|---|
| pCRM end: |
| 9,724,936 |
|---|
| pCRM len: |
| 1,335 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,015 |
|---|
| dpse start: |
| 589,074 |
|---|
| dpse end: |
| 590,336 |
|---|
| dpse len: |
| 1,263 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 6.6 |
|---|
|
| percent iden: |
| 61.0% |
|---|
|
| D.mel sites: |
| 18 |
|---|
| D.pse sites: |
| 13 |
|---|
| Aligned sites: |
| 12 |
|---|
| Aligned + preserved sites: |
| 12 |
|---|
|
| D.mel site dens: |
| 13.5 |
|---|
| D.pse site dens: |
| 10.3 |
|---|
| Aligned site dens: |
| 9.0 |
|---|
| Aligned + preserved site dens: |
| 9.0 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -23,682 |
|---|
| 5' gene CG: |
| CG9930 |
|---|
| 5' gene: |
| E5 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| E5 flybase |
|---|
| 5' gene start: |
| 9,699,920 |
|---|
| 5' gene end: |
| 9,693,238 |
|---|
| 5' gene txl start: |
| 9,699,920 |
|---|
|
| pCRM position 3' gene relative: |
| -2,663 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG2988 |
|---|
| 3' gene: |
| ems |
|---|
| 3' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| ems flybase |
|---|
| 3' gene start: |
| 9,727,599 |
|---|
| 3' gene end: |
| 9,730,365 |
|---|
| 3' gene txl start: |
| 9,727,919 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
