pCRM PCE8109

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8109
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
7,941,601
pCRM end:
7,942,426
pCRM len:
826

D.pse fasta:
dpse unflanked
dpse arm:
3,213,126
dpse start:
1,235,228
dpse end:
1,236,076
dpse len:
849

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
6.5

percent iden:
75.8%

D.mel sites:
10
D.pse sites:
10
Aligned sites:
9
Aligned + preserved sites:
10

D.mel site dens:
12.1
D.pse site dens:
11.8
Aligned site dens:
10.9
Aligned + preserved site dens:
12.1

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+17775
5' gene CG:
CG31361
5' gene:
CG31361
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG31361 flybase
5' gene start:
7,923,826
5' gene end:
7,937,163
5' gene txl start:
7,933,007

pCRM position 3' gene relative:
+11512
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG4702
3' gene:
CG4702
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
CG4702 insitu
3' gene flybase:
CG4702 flybase
3' gene start:
7,953,938
3' gene end:
7,947,317
3' gene txl start:
7,949,600

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: