pCRM PCE8110
| CRM: |
| PCE8110 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 8,804,166 |
|---|
| pCRM end: |
| 8,805,336 |
|---|
| pCRM len: |
| 1,171 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,219 |
|---|
| dpse start: |
| 87,113 |
|---|
| dpse end: |
| 88,472 |
|---|
| dpse len: |
| 1,360 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 6.5 |
|---|
|
| percent iden: |
| 65.3% |
|---|
|
| D.mel sites: |
| 16 |
|---|
| D.pse sites: |
| 14 |
|---|
| Aligned sites: |
| 10 |
|---|
| Aligned + preserved sites: |
| 13 |
|---|
|
| D.mel site dens: |
| 13.7 |
|---|
| D.pse site dens: |
| 10.3 |
|---|
| Aligned site dens: |
| 8.5 |
|---|
| Aligned + preserved site dens: |
| 11.1 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -30,684 |
|---|
| 5' gene CG: |
| CG9468 |
|---|
| 5' gene: |
| CG9468 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG9468 flybase |
|---|
| 5' gene start: |
| 8,773,482 |
|---|
| 5' gene end: |
| 8,769,890 |
|---|
| 5' gene txl start: |
| 8,773,417 |
|---|
|
| pCRM position 3' gene relative: |
| -12,519 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG18024 |
|---|
| 3' gene: |
| SoxN |
|---|
| 3' Gap/pair-rule annotation: |
| BDGP |
|---|
| 3' gene insitu: |
| SoxN insitu |
|---|
| 3' gene flybase: |
| SoxN flybase |
|---|
| 3' gene start: |
| 8,817,855 |
|---|
| 3' gene end: |
| 8,821,901 |
|---|
| 3' gene txl start: |
| 8,818,724 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
