pCRM PCE8123
| CRM: |
| PCE8123 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 15,162,778 |
|---|
| pCRM end: |
| 15,164,524 |
|---|
| pCRM len: |
| 1,747 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,213,243 |
|---|
| dpse start: |
| 415,006 |
|---|
| dpse end: |
| 417,651 |
|---|
| dpse len: |
| 2,646 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 6.4 |
|---|
|
| percent iden: |
| 62.0% |
|---|
|
| D.mel sites: |
| 21 |
|---|
| D.pse sites: |
| 19 |
|---|
| Aligned sites: |
| 10 |
|---|
| Aligned + preserved sites: |
| 16 |
|---|
|
| D.mel site dens: |
| 12.0 |
|---|
| D.pse site dens: |
| 7.2 |
|---|
| Aligned site dens: |
| 5.7 |
|---|
| Aligned + preserved site dens: |
| 9.2 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -6,373 |
|---|
| 5' gene CG: |
| CG4168 |
|---|
| 5' gene: |
| BG:DS03192.2 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| BG:DS03192.2 flybase |
|---|
| 5' gene start: |
| 15,156,405 |
|---|
| 5' gene end: |
| 15,140,191 |
|---|
| 5' gene txl start: |
| 15,156,405 |
|---|
|
| pCRM position 3' gene relative: |
| +59479 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG3994 |
|---|
| 3' gene: |
| BG:DS07295.1 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| BG:DS07295.1 flybase |
|---|
| 3' gene start: |
| 15,224,003 |
|---|
| 3' gene end: |
| 15,206,813 |
|---|
| 3' gene txl start: |
| 15,223,757 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
