pCRM PCE8129

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8129
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
14,972,099
pCRM end:
14,973,036
pCRM len:
938

D.pse fasta:
dpse unflanked
dpse arm:
3,212,221
dpse start:
196,546
dpse end:
197,745
dpse len:
1,200

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
6.3

percent iden:
71.1%

D.mel sites:
17
D.pse sites:
12
Aligned sites:
9
Aligned + preserved sites:
11

D.mel site dens:
18.1
D.pse site dens:
10
Aligned site dens:
9.6
Aligned + preserved site dens:
11.7

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-27,466
5' gene CG:
CG13872
5' gene:
CG13872
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG13872 flybase
5' gene start:
14,944,633
5' gene end:
14,942,540
5' gene txl start:
14,944,566

pCRM position 3' gene relative:
-37,992
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG30447
3' gene:
CG30447
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG30447 flybase
3' gene start:
15,011,028
3' gene end:
15,011,570
3' gene txl start:
15,011,045

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: