pCRM PCE8135

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Region plotRegion plot detailDotplot
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CRM:
PCE8135
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
17,716,817
pCRM end:
17,717,958
pCRM len:
1,142

D.pse fasta:
dpse unflanked
dpse arm:
3,212,155
dpse start:
196,675
dpse end:
197,857
dpse len:
1,183

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
6.2

percent iden:
57.7%

D.mel sites:
14
D.pse sites:
15
Aligned sites:
8
Aligned + preserved sites:
13

D.mel site dens:
12.3
D.pse site dens:
12.7
Aligned site dens:
7.0
Aligned + preserved site dens:
11.4

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+3615
5' gene CG:
CG12348
5' gene:
Sh
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Sh flybase
5' gene start:
17,721,573
5' gene end:
17,659,999
5' gene txl start:
17,707,491

pCRM position 3' gene relative:
+3615
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG12348
3' gene:
Sh
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Sh flybase
3' gene start:
17,721,573
3' gene end:
17,659,999
3' gene txl start:
17,707,491

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: