pCRM PCE8147

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Region plotRegion plot detailDotplot
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CRM:
PCE8147
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
4,145,728
pCRM end:
4,147,090
pCRM len:
1,363

D.pse fasta:
dpse unflanked
dpse arm:
3,212,586
dpse start:
476,632
dpse end:
479,519
dpse len:
2,888

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
6.0

percent iden:
66.2%

D.mel sites:
18
D.pse sites:
21
Aligned sites:
8
Aligned + preserved sites:
16

D.mel site dens:
13.2
D.pse site dens:
7.3
Aligned site dens:
5.9
Aligned + preserved site dens:
11.7

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+3881
5' gene CG:
CG2955
5' gene:
CG2955
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG2955 flybase
5' gene start:
4,141,847
5' gene end:
4,143,772
5' gene txl start:
4,141,917

pCRM position 3' gene relative:
+11580
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG11767
3' gene:
Or24a
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Or24a flybase
3' gene start:
4,158,670
3' gene end:
4,157,257
3' gene txl start:
4,158,670

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: