pCRM PCE8155

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8155
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
2,143,383
pCRM end:
2,144,016
pCRM len:
634

D.pse fasta:
dpse unflanked
dpse arm:
3,212,166
dpse start:
346,567
dpse end:
345,822
dpse len:
746

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.9

percent iden:
71.1%

D.mel sites:
9
D.pse sites:
9
Aligned sites:
6
Aligned + preserved sites:
8

D.mel site dens:
14.2
D.pse site dens:
12.1
Aligned site dens:
9.5
Aligned + preserved site dens:
12.6

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+420
5' gene CG:
CG14045
5' gene:
EG:BACH7M4.1
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
EG:BACH7M4.1 flybase
5' gene start:
2,144,436
5' gene end:
2,134,889
5' gene txl start:
2,142,498

pCRM position 3' gene relative:
+420
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG14045
3' gene:
EG:BACH7M4.1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
EG:BACH7M4.1 flybase
3' gene start:
2,144,436
3' gene end:
2,134,889
3' gene txl start:
2,142,498

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: