pCRM PCE8165

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Region plotRegion plot detailDotplot
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CRM:
PCE8165
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
8,390,109
pCRM end:
8,392,075
pCRM len:
1,967

D.pse fasta:
dpse unflanked
dpse arm:
3,211,870
dpse start:
120,412
dpse end:
122,922
dpse len:
2,511

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.8

percent iden:
57.2%

D.mel sites:
26
D.pse sites:
20
Aligned sites:
9
Aligned + preserved sites:
16

D.mel site dens:
13.2
D.pse site dens:
8.0
Aligned site dens:
4.6
Aligned + preserved site dens:
8.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-513
5' gene CG:
CG12154
5' gene:
oc
5' Gap/pair-rule annotation:
FlyBase
5' gene insitu:
5' gene flybase:
oc flybase
5' gene start:
8,389,596
5' gene end:
8,370,285
5' gene txl start:
8,381,592

pCRM position 3' gene relative:
-23,984
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG12772
3' gene:
CG12772
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG12772 flybase
3' gene start:
8,416,059
3' gene end:
8,419,715
3' gene txl start:
8,416,203

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: