pCRM PCE8169
| CRM: |
| PCE8169 |
|---|
| Overlaps: |
| ftz stripes 1/5 |
|---|
| Reference: |
| Calhoun, 2003 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 2,693,336 |
|---|
| pCRM end: |
| 2,694,915 |
|---|
| pCRM len: |
| 1,580 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,942 |
|---|
| dpse start: |
| 1,790,792 |
|---|
| dpse end: |
| 1,792,082 |
|---|
| dpse len: |
| 1,291 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 5.7 |
|---|
|
| percent iden: |
| 55.4% |
|---|
|
| D.mel sites: |
| 17 |
|---|
| D.pse sites: |
| 12 |
|---|
| Aligned sites: |
| 11 |
|---|
| Aligned + preserved sites: |
| 12 |
|---|
|
| D.mel site dens: |
| 10.8 |
|---|
| D.pse site dens: |
| 9.3 |
|---|
| Aligned site dens: |
| 7.0 |
|---|
| Aligned + preserved site dens: |
| 7.6 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +3290 |
|---|
| 5' gene CG: |
| CG2047 |
|---|
| 5' gene: |
| ftz |
|---|
| 5' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| ftz flybase |
|---|
| 5' gene start: |
| 2,690,046 |
|---|
| 5' gene end: |
| 2,691,951 |
|---|
| 5' gene txl start: |
| 2,690,116 |
|---|
|
| pCRM position 3' gene relative: |
| +63624 |
|---|
| pCRM position relative to 3' gene: |
| downstream |
|---|
| 3' gene CG: |
| CG1028 |
|---|
| 3' gene: |
| Antp |
|---|
| 3' Gap/pair-rule annotation: |
| BDGP |
|---|
| 3' gene insitu: |
| Antp insitu |
|---|
| 3' gene flybase: |
| Antp flybase |
|---|
| 3' gene start: |
| 2,758,539 |
|---|
| 3' gene end: |
| 2,732,740 |
|---|
| 3' gene txl start: |
| 2,735,633 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
