pCRM PCE8171

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Region plotRegion plot detailDotplot
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CRM:
PCE8171
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
1,302,444
pCRM end:
1,303,108
pCRM len:
665

D.pse fasta:
dpse unflanked
dpse arm:
3,211,933
dpse start:
339,734
dpse end:
340,642
dpse len:
909

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.7

percent iden:
76.4%

D.mel sites:
9
D.pse sites:
8
Aligned sites:
7
Aligned + preserved sites:
8

D.mel site dens:
13.5
D.pse site dens:
8.8
Aligned site dens:
10.5
Aligned + preserved site dens:
12.0

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+31949
5' gene CG:
CG32810
5' gene:
EG:196F3.2
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
EG:196F3.2 flybase
5' gene start:
1,270,495
5' gene end:
1,275,057
5' gene txl start:
1,270,899

pCRM position 3' gene relative:
+11836
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG14796
3' gene:
EG:56G7.1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
EG:56G7.1 flybase
3' gene start:
1,314,944
3' gene end:
1,309,162
3' gene txl start:
1,314,944

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: