pCRM PCE8173

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Region plotRegion plot detailDotplot
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CRM:
PCE8173
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
9,681,376
pCRM end:
9,682,499
pCRM len:
1,124

D.pse fasta:
dpse unflanked
dpse arm:
3,213,015
dpse start:
546,289
dpse end:
547,726
dpse len:
1,438

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.7

percent iden:
74.5%

D.mel sites:
14
D.pse sites:
12
Aligned sites:
9
Aligned + preserved sites:
11

D.mel site dens:
12.5
D.pse site dens:
8.3
Aligned site dens:
8.0
Aligned + preserved site dens:
9.8

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-186
5' gene CG:
CG14362
5' gene:
CG14362
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG14362 flybase
5' gene start:
9,681,190
5' gene end:
9,680,401
5' gene txl start:
9,681,190

pCRM position 3' gene relative:
+17421
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG9930
3' gene:
E5
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
E5 flybase
3' gene start:
9,699,920
3' gene end:
9,693,238
3' gene txl start:
9,699,920

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: