pCRM PCE8185

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8185
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
710,838
pCRM end:
711,575
pCRM len:
738

D.pse fasta:
dpse unflanked
dpse arm:
3,213,126
dpse start:
608,549
dpse end:
607,732
dpse len:
818

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.6

percent iden:
64.8%

D.mel sites:
10
D.pse sites:
10
Aligned sites:
7
Aligned + preserved sites:
9

D.mel site dens:
13.6
D.pse site dens:
12.2
Aligned site dens:
9.5
Aligned + preserved site dens:
12.2

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-6,584
5' gene CG:
CG14660
5' gene:
CG14660
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG14660 flybase
5' gene start:
704,254
5' gene end:
701,725
5' gene txl start:
704,200

pCRM position 3' gene relative:
-20,769
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG1119
3' gene:
Gnf1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Gnf1 flybase
3' gene start:
732,344
3' gene end:
735,800
3' gene txl start:
732,432

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: