pCRM PCE8186

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Region plotRegion plot detailDotplot
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CRM:
PCE8186
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
8,453,917
pCRM end:
8,454,507
pCRM len:
591

D.pse fasta:
dpse unflanked
dpse arm:
3,212,355
dpse start:
264,054
dpse end:
262,920
dpse len:
1,135

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.6

percent iden:
67.2%

D.mel sites:
9
D.pse sites:
10
Aligned sites:
6
Aligned + preserved sites:
8

D.mel site dens:
15.2
D.pse site dens:
8.8
Aligned site dens:
10.2
Aligned + preserved site dens:
13.5

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-896
5' gene CG:
CG6902
5' gene:
CG6902
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG6902 flybase
5' gene start:
8,453,021
5' gene end:
8,449,823
5' gene txl start:
8,452,972

pCRM position 3' gene relative:
+13950
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG6694
3' gene:
CG6694
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG6694 flybase
3' gene start:
8,468,457
3' gene end:
8,466,178
3' gene txl start:
8,468,354

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: