pCRM PCE8195

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Region plotRegion plot detailDotplot
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CRM:
PCE8195
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
5,126,445
pCRM end:
5,126,805
pCRM len:
361

D.pse fasta:
dpse unflanked
dpse arm:
3,212,677
dpse start:
15,557
dpse end:
15,990
dpse len:
434

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.5

percent iden:
75.9%

D.mel sites:
9
D.pse sites:
6
Aligned sites:
4
Aligned + preserved sites:
6

D.mel site dens:
24.9
D.pse site dens:
13.8
Aligned site dens:
11.1
Aligned + preserved site dens:
16.6

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+17297
5' gene CG:
CG32423
5' gene:
CG32423
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
CG32423 insitu
5' gene flybase:
CG32423 flybase
5' gene start:
5,144,102
5' gene end:
5,119,983
5' gene txl start:
5,129,623

pCRM position 3' gene relative:
+17297
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG32423
3' gene:
CG32423
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
CG32423 insitu
3' gene flybase:
CG32423 flybase
3' gene start:
5,144,102
3' gene end:
5,119,983
3' gene txl start:
5,129,623

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: