pCRM PCE8221

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Region plotRegion plot detailDotplot
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CRM:
PCE8221
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2R.3
pCRM start:
7,617,876
pCRM end:
7,619,748
pCRM len:
1,873

D.pse fasta:
dpse unflanked
dpse arm:
3,212,896
dpse start:
43,593
dpse end:
46,053
dpse len:
2,461

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.3

percent iden:
59.2%

D.mel sites:
22
D.pse sites:
19
Aligned sites:
7
Aligned + preserved sites:
18

D.mel site dens:
11.7
D.pse site dens:
7.7
Aligned site dens:
3.7
Aligned + preserved site dens:
9.6

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+24108
5' gene CG:
CG8581
5' gene:
fra
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
fra flybase
5' gene start:
7,593,768
5' gene end:
7,628,899
5' gene txl start:
7,594,439

pCRM position 3' gene relative:
-7,049
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG30056
3' gene:
CG30056
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG30056 flybase
3' gene start:
7,626,797
3' gene end:
7,627,374
3' gene txl start:
7,626,892

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: