pCRM PCE8222

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8222
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
5,405,877
pCRM end:
5,406,553
pCRM len:
677

D.pse fasta:
dpse unflanked
dpse arm:
3,212,142
dpse start:
378,645
dpse end:
377,939
dpse len:
707

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.3

percent iden:
76.7%

D.mel sites:
9
D.pse sites:
9
Aligned sites:
8
Aligned + preserved sites:
8

D.mel site dens:
13.3
D.pse site dens:
12.7
Aligned site dens:
11.8
Aligned + preserved site dens:
11.8

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+9321
5' gene CG:
CG6604
5' gene:
H15
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
H15 flybase
5' gene start:
5,396,556
5' gene end:
5,408,143
5' gene txl start:
5,397,094

pCRM position 3' gene relative:
+9321
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG6604
3' gene:
H15
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
H15 flybase
3' gene start:
5,396,556
3' gene end:
5,408,143
3' gene txl start:
5,397,094

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: