pCRM PCE8224

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
[jpg] [pdf][jpg] [pdf][jpg] [pdf]

CRM:
PCE8224
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
13,051,685
pCRM end:
13,052,501
pCRM len:
817

D.pse fasta:
dpse unflanked
dpse arm:
3,213,189
dpse start:
519,722
dpse end:
521,251
dpse len:
1,530

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.3

percent iden:
68.5%

D.mel sites:
14
D.pse sites:
16
Aligned sites:
4
Aligned + preserved sites:
12

D.mel site dens:
17.1
D.pse site dens:
10.5
Aligned site dens:
4.9
Aligned + preserved site dens:
14.7

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-31,482
5' gene CG:
CG9932
5' gene:
CG9932
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG9932 flybase
5' gene start:
13,020,203
5' gene end:
13,011,540
5' gene txl start:
13,020,203

pCRM position 3' gene relative:
+10214
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG31856
3' gene:
CG31856
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG31856 flybase
3' gene start:
13,062,715
3' gene end:
13,060,409
3' gene txl start:
13,060,716

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: