pCRM PCE8232

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8232
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
18,053,073
pCRM end:
18,054,179
pCRM len:
1,107

D.pse fasta:
dpse unflanked
dpse arm:
3,211,778
dpse start:
4,964
dpse end:
5,970
dpse len:
1,007

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.2

percent iden:
54.2%

D.mel sites:
15
D.pse sites:
9
Aligned sites:
9
Aligned + preserved sites:
9

D.mel site dens:
13.6
D.pse site dens:
8.9
Aligned site dens:
8.1
Aligned + preserved site dens:
8.1

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+40454
5' gene CG:
CG31163
5' gene:
CG31163
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG31163 flybase
5' gene start:
18,094,633
5' gene end:
18,114,757
5' gene txl start:
18,095,199

pCRM position 3' gene relative:
+40454
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG31163
3' gene:
CG31163
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG31163 flybase
3' gene start:
18,094,633
3' gene end:
18,114,757
3' gene txl start:
18,095,199

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: