pCRM PCE8235

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8235
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
X.3
pCRM start:
2,190,216
pCRM end:
2,191,697
pCRM len:
1,482

D.pse fasta:
dpse unflanked
dpse arm:
3,212,206
dpse start:
10,448
dpse end:
12,813
dpse len:
2,366

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.2

percent iden:
64.6%

D.mel sites:
17
D.pse sites:
19
Aligned sites:
8
Aligned + preserved sites:
12

D.mel site dens:
11.5
D.pse site dens:
8.0
Aligned site dens:
5.4
Aligned + preserved site dens:
8.1

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-4,481
5' gene CG:
CG7952
5' gene:
gt
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
gt insitu
5' gene flybase:
gt flybase
5' gene start:
2,185,735
5' gene end:
2,183,878
5' gene txl start:
2,185,624

pCRM position 3' gene relative:
+9051
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG7925
3' gene:
tko
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
tko flybase
3' gene start:
2,200,748
3' gene end:
2,199,078
3' gene txl start:
2,200,557

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: