pCRM PCE8245

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Region plotRegion plot detailDotplot
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CRM:
PCE8245
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
6,438,623
pCRM end:
6,439,396
pCRM len:
774

D.pse fasta:
dpse unflanked
dpse arm:
3,212,250
dpse start:
59,037
dpse end:
58,100
dpse len:
938

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.1

percent iden:
62.5%

D.mel sites:
11
D.pse sites:
9
Aligned sites:
7
Aligned + preserved sites:
8

D.mel site dens:
14.2
D.pse site dens:
9.6
Aligned site dens:
9.0
Aligned + preserved site dens:
10.3

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+17429
5' gene CG:
CG14910
5' gene:
CG14910
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG14910 flybase
5' gene start:
6,421,194
5' gene end:
6,421,698
5' gene txl start:
6,421,194

pCRM position 3' gene relative:
-4,185
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG14911
3' gene:
CG14911
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG14911 flybase
3' gene start:
6,443,581
3' gene end:
6,444,585
3' gene txl start:
6,443,581

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: