pCRM PCE8247

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Region plotRegion plot detailDotplot
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CRM:
PCE8247
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
15,388,862
pCRM end:
15,389,498
pCRM len:
637

D.pse fasta:
dpse unflanked
dpse arm:
3,212,649
dpse start:
892,814
dpse end:
892,077
dpse len:
738

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.1

percent iden:
64.4%

D.mel sites:
10
D.pse sites:
9
Aligned sites:
5
Aligned + preserved sites:
9

D.mel site dens:
15.7
D.pse site dens:
12.2
Aligned site dens:
7.8
Aligned + preserved site dens:
14.1

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+59333
5' gene CG:
CG31175
5' gene:
Dys
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Dys flybase
5' gene start:
15,329,529
5' gene end:
15,420,470
5' gene txl start:
15,329,598

pCRM position 3' gene relative:
-5,452
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG7344
3' gene:
CG7344
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG7344 flybase
3' gene start:
15,394,950
3' gene end:
15,412,304
3' gene txl start:
15,411,446

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: