pCRM PCE8281

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Region plotRegion plot detailDotplot
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CRM:
PCE8281
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
3,877,335
pCRM end:
3,878,714
pCRM len:
1,380

D.pse fasta:
dpse unflanked
dpse arm:
3,212,586
dpse start:
77,389
dpse end:
80,478
dpse len:
3,090

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.0

percent iden:
65.4%

D.mel sites:
19
D.pse sites:
19
Aligned sites:
6
Aligned + preserved sites:
15

D.mel site dens:
13.8
D.pse site dens:
6.1
Aligned site dens:
4.3
Aligned + preserved site dens:
10.9

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+2679
5' gene CG:
CG3399
5' gene:
capu
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
capu flybase
5' gene start:
3,881,393
5' gene end:
3,865,226
5' gene txl start:
3,879,790

pCRM position 3' gene relative:
+2679
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG3399
3' gene:
capu
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
capu flybase
3' gene start:
3,881,393
3' gene end:
3,865,226
3' gene txl start:
3,879,790

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: