pCRM PCE8283
| CRM: |
| PCE8283 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 2L.3C |
|---|
| pCRM start: |
| 12,193,053 |
|---|
| pCRM end: |
| 12,193,686 |
|---|
| pCRM len: |
| 634 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,211,788 |
|---|
| dpse start: |
| 31,992 |
|---|
| dpse end: |
| 33,015 |
|---|
| dpse len: |
| 1,024 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 5.0 |
|---|
|
| percent iden: |
| 52.8% |
|---|
|
| D.mel sites: |
| 10 |
|---|
| D.pse sites: |
| 10 |
|---|
| Aligned sites: |
| 5 |
|---|
| Aligned + preserved sites: |
| 7 |
|---|
|
| D.mel site dens: |
| 15.8 |
|---|
| D.pse site dens: |
| 9.8 |
|---|
| Aligned site dens: |
| 7.9 |
|---|
| Aligned + preserved site dens: |
| 11.0 |
|---|
|
| pCRM position relative to 5' gene: |
| upstream |
|---|
| pCRM position 5' gene relative: |
| -26,296 |
|---|
| 5' gene CG: |
| CG6579 |
|---|
| 5' gene: |
| CG6579 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG6579 flybase |
|---|
| 5' gene start: |
| 12,166,757 |
|---|
| 5' gene end: |
| 12,164,318 |
|---|
| 5' gene txl start: |
| 12,166,595 |
|---|
|
| pCRM position 3' gene relative: |
| -1,027 |
|---|
| pCRM position relative to 3' gene: |
| upstream |
|---|
| 3' gene CG: |
| CG31762 |
|---|
| 3' gene: |
| aret |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| aret flybase |
|---|
| 3' gene start: |
| 12,194,713 |
|---|
| 3' gene end: |
| 12,301,672 |
|---|
| 3' gene txl start: |
| 12,229,950 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
