pCRM PCE8284
| CRM: |
| PCE8284 |
|---|
| Overlaps: |
| 0 |
|---|
| Reference: |
| 0 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 18,033,444 |
|---|
| pCRM end: |
| 18,034,110 |
|---|
| pCRM len: |
| 667 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,652 |
|---|
| dpse start: |
| 1,168,815 |
|---|
| dpse end: |
| 1,170,352 |
|---|
| dpse len: |
| 1,538 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 5.0 |
|---|
|
| percent iden: |
| 54.1% |
|---|
|
| D.mel sites: |
| 9 |
|---|
| D.pse sites: |
| 22 |
|---|
| Aligned sites: |
| 5 |
|---|
| Aligned + preserved sites: |
| 9 |
|---|
|
| D.mel site dens: |
| 13.5 |
|---|
| D.pse site dens: |
| 14.3 |
|---|
| Aligned site dens: |
| 7.5 |
|---|
| Aligned + preserved site dens: |
| 13.5 |
|---|
|
| pCRM position relative to 5' gene: |
| downstream |
|---|
| pCRM position 5' gene relative: |
| +4935 |
|---|
| 5' gene CG: |
| CG5732 |
|---|
| 5' gene: |
| CG5732 |
|---|
| 5' Gap/pair-rule annotation: |
| |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| CG5732 flybase |
|---|
| 5' gene start: |
| 18,028,509 |
|---|
| 5' gene end: |
| 18,033,382 |
|---|
| 5' gene txl start: |
| 18,028,987 |
|---|
|
| pCRM position 3' gene relative: |
| +60523 |
|---|
| pCRM position relative to 3' gene: |
| within_intron |
|---|
| 3' gene CG: |
| CG31163 |
|---|
| 3' gene: |
| CG31163 |
|---|
| 3' Gap/pair-rule annotation: |
| |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| CG31163 flybase |
|---|
| 3' gene start: |
| 18,094,633 |
|---|
| 3' gene end: |
| 18,114,757 |
|---|
| 3' gene txl start: |
| 18,095,199 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
