pCRM PCE8293

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Region plotRegion plot detailDotplot
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CRM:
PCE8293
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
5,932,279
pCRM end:
5,932,988
pCRM len:
710

D.pse fasta:
dpse unflanked
dpse arm:
3,212,418
dpse start:
468,698
dpse end:
469,488
dpse len:
791

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.9

percent iden:
65.5%

D.mel sites:
10
D.pse sites:
10
Aligned sites:
6
Aligned + preserved sites:
8

D.mel site dens:
14.1
D.pse site dens:
12.6
Aligned site dens:
8.5
Aligned + preserved site dens:
11.3

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+14128
5' gene CG:
CG9019
5' gene:
dsf
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
dsf flybase
5' gene start:
5,918,151
5' gene end:
5,930,982
5' gene txl start:
5,918,406

pCRM position 3' gene relative:
-2,908
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG9042
3' gene:
Gpdh
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Gpdh flybase
3' gene start:
5,935,896
3' gene end:
5,940,528
3' gene txl start:
5,936,324

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: