pCRM PCE8295

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Region plotRegion plot detailDotplot
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CRM:
PCE8295
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
16,111,912
pCRM end:
16,113,071
pCRM len:
1,160

D.pse fasta:
dpse unflanked
dpse arm:
3,212,184
dpse start:
289,692
dpse end:
288,115
dpse len:
1,578

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.9

percent iden:
64.6%

D.mel sites:
16
D.pse sites:
16
Aligned sites:
3
Aligned + preserved sites:
13

D.mel site dens:
13.8
D.pse site dens:
10.1
Aligned site dens:
2.6
Aligned + preserved site dens:
11.2

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-14,299
5' gene CG:
CG5151
5' gene:
CG5151
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG5151 flybase
5' gene start:
16,097,613
5' gene end:
16,088,361
5' gene txl start:
16,091,007

pCRM position 3' gene relative:
+49908
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG13073
3' gene:
CG13073
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG13073 flybase
3' gene start:
16,162,979
3' gene end:
16,161,929
3' gene txl start:
16,162,979

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: