pCRM PCE8309

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Region plotRegion plot detailDotplot
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CRM:
PCE8309
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
3,825,809
pCRM end:
3,827,419
pCRM len:
1,611

D.pse fasta:
dpse unflanked
dpse arm:
3,213,134
dpse start:
81,253
dpse end:
79,350
dpse len:
1,904

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.8

percent iden:
64.6%

D.mel sites:
17
D.pse sites:
15
Aligned sites:
8
Aligned + preserved sites:
13

D.mel site dens:
10.6
D.pse site dens:
7.9
Aligned site dens:
5.0
Aligned + preserved site dens:
8.1

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+7561
5' gene CG:
CG16738
5' gene:
slp1
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
slp1 insitu
5' gene flybase:
slp1 flybase
5' gene start:
3,818,248
5' gene end:
3,819,706
5' gene txl start:
3,818,352

pCRM position 3' gene relative:
-1,991
pCRM position relative to 3' gene:
upstream
3' gene CG:
CG2939
3' gene:
slp2
3' Gap/pair-rule annotation:
BDGP
3' gene insitu:
slp2 insitu
3' gene flybase:
slp2 flybase
3' gene start:
3,829,410
3' gene end:
3,831,770
3' gene txl start:
3,829,766

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: