pCRM PCE8316

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Region plotRegion plot detailDotplot
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CRM:
PCE8316
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
18,303,559
pCRM end:
18,304,889
pCRM len:
1,331

D.pse fasta:
dpse unflanked
dpse arm:
3,212,212
dpse start:
362,653
dpse end:
360,855
dpse len:
1,799

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.8

percent iden:
49.0%

D.mel sites:
17
D.pse sites:
11
Aligned sites:
7
Aligned + preserved sites:
11

D.mel site dens:
12.8
D.pse site dens:
6.1
Aligned site dens:
5.3
Aligned + preserved site dens:
8.3

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-50,266
5' gene CG:
CG4345
5' gene:
grim
5' Gap/pair-rule annotation:
BDGP
5' gene insitu:
grim insitu
5' gene flybase:
grim flybase
5' gene start:
18,253,293
5' gene end:
18,251,597
5' gene txl start:
18,252,978

pCRM position 3' gene relative:
+42393
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG4319
3' gene:
rpr
3' Gap/pair-rule annotation:
FlyBase
3' gene insitu:
3' gene flybase:
rpr flybase
3' gene start:
18,347,282
3' gene end:
18,346,431
3' gene txl start:
18,347,114

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: