pCRM PCE8320

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8320
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
2,004,674
pCRM end:
2,005,266
pCRM len:
593

D.pse fasta:
dpse unflanked
dpse arm:
3,212,968
dpse start:
46,727
dpse end:
45,470
dpse len:
1,258

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.8

percent iden:
60.4%

D.mel sites:
9
D.pse sites:
13
Aligned sites:
4
Aligned + preserved sites:
9

D.mel site dens:
15.2
D.pse site dens:
10.3
Aligned site dens:
6.7
Aligned + preserved site dens:
15.2

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-49
5' gene CG:
CG15354
5' gene:
CG15354
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG15354 flybase
5' gene start:
2,004,625
5' gene end:
2,001,910
5' gene txl start:
2,004,625

pCRM position 3' gene relative:
+3592
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG15353
3' gene:
CG15353
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG15353 flybase
3' gene start:
2,008,858
3' gene end:
2,008,418
3' gene txl start:
2,008,811

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: