pCRM PCE8322

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Region plotRegion plot detailDotplot
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CRM:
PCE8322
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
8,658,121
pCRM end:
8,658,685
pCRM len:
565

D.pse fasta:
dpse unflanked
dpse arm:
3,212,652
dpse start:
465,452
dpse end:
464,895
dpse len:
558

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.8

percent iden:
73.5%

D.mel sites:
9
D.pse sites:
8
Aligned sites:
5
Aligned + preserved sites:
7

D.mel site dens:
15.9
D.pse site dens:
14.3
Aligned site dens:
8.8
Aligned + preserved site dens:
12.4

pCRM position relative to 5' gene:
upstream
pCRM position 5' gene relative:
-15,351
5' gene CG:
CG31345
5' gene:
CG31345
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG31345 flybase
5' gene start:
8,642,770
5' gene end:
8,637,085
5' gene txl start:
8,639,662

pCRM position 3' gene relative:
+10626
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG10134
3' gene:
beat-Va
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
beat-Va flybase
3' gene start:
8,669,311
3' gene end:
8,667,958
3' gene txl start:
8,669,309

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: