pCRM PCE8330

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8330
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
647,371
pCRM end:
647,938
pCRM len:
568

D.pse fasta:
dpse unflanked
dpse arm:
3,211,855
dpse start:
14,238
dpse end:
13,546
dpse len:
693

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.8

percent iden:
66.9%

D.mel sites:
12
D.pse sites:
7
Aligned sites:
5
Aligned + preserved sites:
7

D.mel site dens:
21.1
D.pse site dens:
10.1
Aligned site dens:
8.8
Aligned + preserved site dens:
12.3

pCRM position relative to 5' gene:
downstream
pCRM position 5' gene relative:
+12382
5' gene CG:
CG12189
5' gene:
Rev1
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Rev1 flybase
5' gene start:
634,989
5' gene end:
638,604
5' gene txl start:
635,070

pCRM position 3' gene relative:
+12961
pCRM position relative to 3' gene:
downstream
3' gene CG:
CG17129
3' gene:
CG17129
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG17129 flybase
3' gene start:
660,899
3' gene end:
658,500
3' gene txl start:
660,374

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: