pCRM PCE8342

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Region plotRegion plot detailDotplot
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CRM:
PCE8342
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
7,797,257
pCRM end:
7,798,139
pCRM len:
883

D.pse fasta:
dpse unflanked
dpse arm:
3,212,184
dpse start:
480,193
dpse end:
481,281
dpse len:
1,089

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.7

percent iden:
65.3%

D.mel sites:
13
D.pse sites:
8
Aligned sites:
5
Aligned + preserved sites:
8

D.mel site dens:
14.7
D.pse site dens:
7.3
Aligned site dens:
5.7
Aligned + preserved site dens:
9.1

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+4655
5' gene CG:
CG17888
5' gene:
Pdp1
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
Pdp1 flybase
5' gene start:
7,792,602
5' gene end:
7,773,863
5' gene txl start:
7,791,107

pCRM position 3' gene relative:
+4655
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG17888
3' gene:
Pdp1
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
Pdp1 flybase
3' gene start:
7,792,602
3' gene end:
7,773,863
3' gene txl start:
7,791,107

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: