pCRM PCE8345

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8345
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
16,619,155
pCRM end:
16,620,782
pCRM len:
1,628

D.pse fasta:
dpse unflanked
dpse arm:
3,213,128
dpse start:
261,761
dpse end:
264,422
dpse len:
2,662

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.7

percent iden:
62.7%

D.mel sites:
19
D.pse sites:
20
Aligned sites:
5
Aligned + preserved sites:
17

D.mel site dens:
11.7
D.pse site dens:
7.5
Aligned site dens:
3.1
Aligned + preserved site dens:
10.4

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+14416
5' gene CG:
CG31738
5' gene:
CG31738
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG31738 flybase
5' gene start:
16,635,198
5' gene end:
16,640,110
5' gene txl start:
16,635,480

pCRM position 3' gene relative:
+14416
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG31738
3' gene:
CG31738
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG31738 flybase
3' gene start:
16,635,198
3' gene end:
16,640,110
3' gene txl start:
16,635,480

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: