pCRM PCE8361
| CRM: |
| PCE8361 |
|---|
| Overlaps: |
| Ubx BRE |
|---|
| Reference: |
| Qian, 1991 |
|---|
|
| D.mel fasta: |
| dmel unflanked |
|---|
| pCRM region: |
| genomic region |
|---|
| Chrom arm: |
| 3R.3 |
|---|
| pCRM start: |
| 12,526,665 |
|---|
| pCRM end: |
| 12,527,949 |
|---|
| pCRM len: |
| 1,285 |
|---|
|
| D.pse fasta: |
| dpse unflanked |
|---|
| dpse arm: |
| 3,212,236 |
|---|
| dpse start: |
| 315,128 |
|---|
| dpse end: |
| 316,690 |
|---|
| dpse len: |
| 1,563 |
|---|
|
| Flanked D.mel fasta: |
| dmel flanked |
|---|
| Flanked D.pse fasta: |
| dpse flanked |
|---|
| LAGAN alignment (readable): |
| alignment |
|---|
| LAGAN alignment (mfa): |
| alignment |
|---|
|
| D.mel binding site xml: |
| xml |
|---|
|
| overall site conservation z-score: |
| 4.6 |
|---|
|
| percent iden: |
| 64.9% |
|---|
|
| D.mel sites: |
| 16 |
|---|
| D.pse sites: |
| 14 |
|---|
| Aligned sites: |
| 6 |
|---|
| Aligned + preserved sites: |
| 13 |
|---|
|
| D.mel site dens: |
| 12.5 |
|---|
| D.pse site dens: |
| 9.0 |
|---|
| Aligned site dens: |
| 4.7 |
|---|
| Aligned + preserved site dens: |
| 10.1 |
|---|
|
| pCRM position relative to 5' gene: |
| within_intron |
|---|
| pCRM position 5' gene relative: |
| +32417 |
|---|
| 5' gene CG: |
| CG10388 |
|---|
| 5' gene: |
| Ubx |
|---|
| 5' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 5' gene insitu: |
| |
|---|
| 5' gene flybase: |
| Ubx flybase |
|---|
| 5' gene start: |
| 12,560,366 |
|---|
| 5' gene end: |
| 12,482,115 |
|---|
| 5' gene txl start: |
| 12,559,203 |
|---|
|
| pCRM position 3' gene relative: |
| +32417 |
|---|
| pCRM position relative to 3' gene: |
| within_intron |
|---|
| 3' gene CG: |
| CG10388 |
|---|
| 3' gene: |
| Ubx |
|---|
| 3' Gap/pair-rule annotation: |
| FlyBase |
|---|
| 3' gene insitu: |
| |
|---|
| 3' gene flybase: |
| Ubx flybase |
|---|
| 3' gene start: |
| 12,560,366 |
|---|
| 3' gene end: |
| 12,482,115 |
|---|
| 3' gene txl start: |
| 12,559,203 |
|---|
|
| Additional Gap/pair-rule gene within 20kb: |
| |
|---|
| Gap/pair-rule annotation: |
| |
|---|
| pCRM relative position: |
| |
|---|
