pCRM PCE8365

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8365
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
13,929,707
pCRM end:
13,930,440
pCRM len:
734

D.pse fasta:
dpse unflanked
dpse arm:
3,213,197
dpse start:
112,004
dpse end:
113,272
dpse len:
1,269

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.6

percent iden:
62.4%

D.mel sites:
10
D.pse sites:
10
Aligned sites:
4
Aligned + preserved sites:
9

D.mel site dens:
13.6
D.pse site dens:
7.9
Aligned site dens:
5.4
Aligned + preserved site dens:
12.3

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+13168
5' gene CG:
CG7847
5' gene:
sr
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
sr flybase
5' gene start:
13,916,539
5' gene end:
13,959,486
5' gene txl start:
13,921,742

pCRM position 3' gene relative:
+13168
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG7847
3' gene:
sr
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
sr flybase
3' gene start:
13,916,539
3' gene end:
13,959,486
3' gene txl start:
13,921,742

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: