pCRM PCE8383

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Region plotRegion plot detailDotplot
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CRM:
PCE8383
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3R.3
pCRM start:
11,464,046
pCRM end:
11,464,759
pCRM len:
714

D.pse fasta:
dpse unflanked
dpse arm:
3,212,649
dpse start:
301,358
dpse end:
300,441
dpse len:
918

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.5

percent iden:
50.7%

D.mel sites:
10
D.pse sites:
15
Aligned sites:
4
Aligned + preserved sites:
10

D.mel site dens:
14.0
D.pse site dens:
16.3
Aligned site dens:
5.6
Aligned + preserved site dens:
14.0

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+5424
5' gene CG:
CG5302
5' gene:
CG5302
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG5302 flybase
5' gene start:
11,458,622
5' gene end:
11,464,995
5' gene txl start:
11,458,622

pCRM position 3' gene relative:
+5424
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG5302
3' gene:
CG5302
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG5302 flybase
3' gene start:
11,458,622
3' gene end:
11,464,995
3' gene txl start:
11,458,622

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: