pCRM PCE8388

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8388
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
3L.3
pCRM start:
1,256,948
pCRM end:
1,257,837
pCRM len:
890

D.pse fasta:
dpse unflanked
dpse arm:
3,212,592
dpse start:
670,289
dpse end:
671,337
dpse len:
1,049

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
4.5

percent iden:
53.7%

D.mel sites:
10
D.pse sites:
11
Aligned sites:
5
Aligned + preserved sites:
9

D.mel site dens:
11.2
D.pse site dens:
10.5
Aligned site dens:
5.6
Aligned + preserved site dens:
10.1

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+348
5' gene CG:
CG32333
5' gene:
CG32333
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
CG32333 flybase
5' gene start:
1,256,600
5' gene end:
1,274,914
5' gene txl start:
1,264,364

pCRM position 3' gene relative:
+348
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG32333
3' gene:
CG32333
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
CG32333 flybase
3' gene start:
1,256,600
3' gene end:
1,274,914
3' gene txl start:
1,264,364

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: